Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

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Determination of steel fibres distribution in self-compacting concrete beams using X-ray computed tomography

Determination of steel fibres distribution in self-compacting concrete beams using X-ray computed tomography

In this paper a study concerning an automatic determination of distribution of steel fibres in self-compacting concrete (SCC) is presented. The determination of fibre distribution is required to assess any relationship between those features and casting methods of concrete elements. Concrete beams with steel fibres of various types and casting methods were examined. Involved methods were computed tomography imaging followed by image analysis. After image analysis a label map consisting of all... Read more

T. Ponikiewski, J. Golaszewski, M. Rudzki, M. Bugdol

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Observing the devastating coffee berry borer (Hypothenemus hampei) inside the coffee berry using microcomputed tomography

Observing the devastating coffee berry borer (Hypothenemus hampei) inside the coffee berry using microcomputed tomography

The coffee berry borer is the most devastating insect pest of coffee throughout the world. The insect spends most of its life cycle inside the coffee berry, which makes it quite difficult to observe its behaviour. Micro-computed tomography (micro-CT) was used to observe all developmental stages of the coffee berry borer inside coffee berries (Coffea canephora). An interesting oviposition pattern involving a sequential placement of eggs starting in the periphery of the seed and moving inwards ... Read more

Ignacio Alba-Alejandre, Javier Alba-Tercedor, Fernando E. Vega

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Air-entrained Concrete: Relationship between Thermal Conductivity and Pore Distribution Analyzed by X-Ray Tomography

Air-entrained Concrete: Relationship between Thermal Conductivity and Pore Distribution Analyzed by X-Ray Tomography

The thermal conductivity values of ordinary concrete can be adjusted to those prescribed in constructions by entraining air bubbles to reduce the density of concrete in order to achieve good thermal insulation. This paper concerns the analysis of air bubble distribution in concrete obtained by micro X-ray µCT (computed tomography) and correlates it with its thermal conductivity (k). (…) The results show that air-entrainment leads to viable use of this material as sealer to achieve good... Read more

A. P. Peruzzi, J. A. Rossignolo and H. Kahn

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Vascular structure of the earliest shark teeth

Vascular structure of the earliest shark teeth

Here we use synchrotron tomography to characterise dental vasculature in the oldest known tooth-bearing sharks, Leonodus carlsi Mader, 1986 and Celtiberina maderi Wang, 1993. Three dimensional reconstruction of the vascular system and microstructure of both taxa revealed a complex and dense network of canals, including horizontal, ascending and secondary bifurcated canals, as well as histological features consistent with an osteodont histotype. However, L. carlsi and C. maderi also exhibit si... Read more

Carlos Martinez-Perez, Alba Martin-Lazaro, Humberto G Ferron, Martina Kirstein, Philip C.J. Donoghue, Hector Botella

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Simulation Analysis on Water’s Micro Seepage Laws under Different Pressure Gradients Using Computed Tomography Method

Simulation Analysis on Water’s Micro Seepage Laws under Different Pressure Gradients Using Computed Tomography Method

The aim of this paper was to develop a model that can characterize the actual micropore structures in coal and gain an in-depth insight into water’s seepage rules in coal pores under different pressure gradients from a microscopic perspective. To achieve this goal, long-flame coals were first scanned by an X-ray 3D microscope; then, through a representative elementary volume (REV) analysis, the optimal side length was determined to be 60 μm; subsequently, by using Avizo software, the coal ... Read more

Gang Zhou, Lei Qiu, Wenzheng Zhang, and Jiao Xue

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Effects of Porosity on Mechanical Properties and Corrosion Resistances of PM-Fabricated Porous Ti-10Mo Alloy

Effects of Porosity on Mechanical Properties and Corrosion Resistances of PM-Fabricated Porous Ti-10Mo Alloy

Porous binary Ti-10Mo alloys were prepared using non-spherical titanium, molybdenum powders by the powder metallurgy (PM) space holder technique. Based on the three-dimensional analysis of porosity characteristics, a detailed assessment of the effects of porosity on mechanical properties and corrosion resistances in phosphate-buffered saline (PBS) was carried out. For comparison, PM-fabricated CP-Ti with 50.5% porosity sintered at 1200 °C for 2 h and dense Ti-10Mo alloy sintered at 1450 °C ... Read more

Wei Xu, Xin Lu, Bing Zhang, Chengcheng Liu, Shaomin Lv, Shidi Yang and Xuanhui Qu

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A method for deducing neck mobility in plesiosaurs, using the exceptionally preserved Nichollssaura borealis

A method for deducing neck mobility in plesiosaurs, using the exceptionally preserved Nichollssaura borealis

The elongate-necked aquatic plesiosaurs existed for 135 Myr during the Mesozoic. The function of this elongate neck is a point of debate. Using computed tomography and three-dimensional (3D) modelling, the range of motion (ROM) of the plesiosaur Nichollssaura borealis neck was assessed. To quantify the ROM, the intervertebral mobility was measured along the cervical vertebral column. This was done by manipulating the 3D models in the lateral and dorsoventral directions during two tri... Read more

Ramon S. Nagesan, Donald M. Henderson, Jason S. Anderson

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Ptychographic X-ray CT characterization of the osteocyte lacuno-canalicular network in a male rat's glucocorticoid induced osteoporosis model

Ptychographic X-ray CT characterization of the osteocyte lacuno-canalicular network in a male rat's glucocorticoid induced osteoporosis model

Ptychographic X-ray computed tomography (PXCT) is a quantitative imaging modality that non-destructively maps the 3D electron density inside an object with tens of nanometers spatial resolution. This method provides unique access to the morphology and structure of the osteocyte lacuno-canalicular network (LCN) and nanoscale density of the tissue in the vicinity of an osteocyte lacuna.  Our findings indicate that PXCT can non-destructively provide detailed, nanoscale information on the 3D org... Read more

Antonia Ciani, Hechmi Toumi, Stéphane Pallu, Esther H.R.Tsai, Ana Diaz, Manuel Guizar-Sicairos, Mirko Holler, Eric Lespessailles, Cameron M.Kewish | Synchrotron Soleil, France

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Secure corridor for infraacetabular screws in acetabular fracture fixation—a 3-D radiomorphometric analysis of 124 pelvic CT datasets

Secure corridor for infraacetabular screws in acetabular fracture fixation—a 3-D radiomorphometric analysis of 124 pelvic CT datasets

Acetabular fracture surgery is directed toward anatomical reduction and stable fixation to allow for the early functional rehabilitation of an injured hip joint. Recent biomechanical investigations have shown the superiority of using an additional screw in the infraacetabular (IA) region, thereby transfixing the separated columns to strengthen the construct by closing the periacetabular fixation frame. However, the inter-individual existence and variance concerning secure IA screw corridors a... Read more

Stephan Arlt, Hansrudi Noser, Andreas Wienke, Florian Radetzki, Gunther Olaf Hofmann, Thomas Mendel

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Convergent evolution of a mobile bony tongue in flighted dinosaurs and pterosaurs

Convergent evolution of a mobile bony tongue in flighted dinosaurs and pterosaurs

The tongue, with fleshy, muscular, and bony components, is an innovation of the earliest land-dwelling vertebrates with key functions in both feeding and respiration. Here, we bring together evidence from preserved hyoid elements from dinosaurs and outgroup archosaurs, including pterosaurs, with enhanced contrast x-ray computed tomography data from extant taxa. Midline ossification is a key component of the origin of an avian hyoid. The elaboration of the avian tongue includes the evolution o... Read more

Zhiheng Li, Zhonghe Zhou, Julia A. Clarke

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3D characterization of the fracture mechanisms of a Fe-rich Al-Si-Cu alloy

3D characterization of the fracture mechanisms of a Fe-rich Al-Si-Cu alloy

The effect of the defect size and morphology on the fatigue damage evolution was analysed in a recycled Al-Si-Cu alloy by micro-computed tomography and scanning electron microscopy. Fatigue tests were performed and the different crack initiation scenarios were characterized and classified. The interaction between shrinkage and gas pores was the key crack initiation mechanism and the ß-Al5FeSi particles did not play any role in the crack initiation phase. However, crack path analysis indicate... Read more

Angelika Brueckner-Foit, Inigo Bacaicoa, Martin Luetje, Marcel Wicke, Andreas Geisert, Martin Fehlbier

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Characterisation of the diffusion properties of metal foam hybrid flow-fields for fuel cells using optical flow visualisation and X-ray computed tomography

Characterisation of the diffusion properties of metal foam hybrid flow-fields for fuel cells using optical flow visualisation and X-ray computed tomography

The flow distribution behaviour of open-cell metallic foam fuel cell flow-fields are evaluated using ex-situ optical analysis and X-ray computed tomography (X-ray CT). Five different manifold designs are evaluated and flow distribution and pressure drop ... Read more

A.Fly, D.Butcher, Q.Meyer, M.Whiteley, A.Spencer, C.Kim, P.R.Shearing, D.J.L.Brett, R.Chen

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An Investigation of Fiber Reinforced Chemically Bonded Phosphate Ceramic Composites at Room Temperature

An Investigation of Fiber Reinforced Chemically Bonded Phosphate Ceramic Composites at Room Temperature

In this study, chemically bonded phosphate ceramic (CBPC) fiber reinforced composites were made at indoor temperatures. The mechanical properties and microstructure of the CBPC composites were studied. The CBPC matrix of aluminum phosphate binder, metakaolin, and magnesia with different Si/P ratios was prepared. The results show that when the Si/P ratio was 1.2, and magnesia content in the CBPC was 15%, CBPC reached its maximum flexural strength. The fiber reinforced CBPC composites were prep... Read more

Zhu Ding; Yu-Yu Li; Can Lu; Jian Liu

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Evolution of damage during the fatigue of 3D woven glass-fibre reinforced composites subjected to tension–tension loading observed by time-lapse X-ray tomography

Evolution of damage during the fatigue of 3D woven glass-fibre reinforced composites subjected to tension–tension loading observed by time-lapse X-ray tomography

Three dimensional (3D) composites were proposed over 40 years ago in an attempt to overcome the shortcomings of 2D laminates, by incorporating fibres into the through-thickness direction. 3D weaving offer significant manufacturing benefits as well as creating versatile textiles having a range of 3D architectures.

The development of fatigue damage in a glass fibre modified layer-to-layer three dimensional (3D) woven composite has been followed by time-lapse X-ray computed tomograp... Read more

B. Yu, R. Blanc, C. Soutis, P.J. Withers

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A Structure and Durability Comparison of Membrane Electrode Assembly Fabrication Methods: Self-Assembled Versus Hot-Pressed

A Structure and Durability Comparison of Membrane Electrode Assembly Fabrication Methods: Self-Assembled Versus Hot-Pressed

The most common means of fabricating membrane electrode assemblies (MEAs) for polymer electrolyte fuel cells (PEFCs) involves a hot-press step. The conditions used to perform the hot-press impacts the performance and durability of the fuel cell.

However, the hot-press process is not essential for achieving operational MEAs and some practitioners dispense with the hot-press stage altogether by using a self-assembled approach. By performing the integration of the components in-situ durin... Read more

Jennifer Hack, T. M. M. Heenan, F. Iacoviello, N. Mansor, Q. Meyer, P. Shearing, N. Brandon and D. J. L. Brett

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3D Failure Analysis of Pure Mechanical and Pure Chemical Degradation in Fuel Cell Membranes

3D Failure Analysis of Pure Mechanical and Pure Chemical Degradation in Fuel Cell Membranes

Lifetime-limiting failure of fuel cell membranes is generally attributed to their chemical and/or mechanical degradation. Although both of these degradation modes occur concurrently during operational duty cycles, their uncoupled investigations can provide useful insights into their individual characteristics and consequential impacts on the overall membrane failure.

X-ray computed tomography is emerging as an advantageous tool for fuel cell failure analysis due to its non-destructive ... Read more

Yadvinder Singh, Francesco P. Orfino, Monica Dutta, and Erik Kjeang

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Reinvestigating an enigmatic Late Cretaceous monocot: morphology, taxonomy, and biogeography of Viracarpon

Reinvestigating an enigmatic Late Cretaceous monocot: morphology, taxonomy, and biogeography of Viracarpon

Angiosperm-dominated floras of the Late Cretaceous are essential for understanding the evolutionary, ecological, and geographic radiation of flowering plants.

The Late Cretaceous–early Paleogene Deccan Intertrappean Beds of India contain angiosperm-dominated plant fossil assemblages known from multiple localities in central India. Numerous monocots have been documented from these assemblages, providing a window into an important but poorly understood time in their diversification. On... Read more

Kelly K.S. Matsunaga, Selena Y. Smith, Steven R. Manchester, Dashrath Kapgate, Deepak Ramteke, Amin Garbout, and Herminso Villarraga-Gómez

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Multi-length scale tomography for the determination and optimization of the effective microstructural properties in novel hierarchical solid oxide fuel cell anodes

Multi-length scale tomography for the determination and optimization of the effective microstructural properties in novel hierarchical solid oxide fuel cell anodes

Our parametric study shows that increasing the porosity in the spongy layer beyond 10% enhances the effective transport parameters of the spongy layer at an exponential rate, but linearly for the full anode. For the first time, local and global mass transport properties are correlated to the microstructure, which is of wide interest for rationalizing the design optimization of SOFC electrodes and more generally for hierarchical materials in batteries and membranes.

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Xuekun Lu, Oluwadamilola O. Taiwo, Antonio Bertei, Tao Li, Kang Li, Dan J.L. Brett, Paul R.Shearing

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A Middle Triassic pachypleurosaur (Diapsida: Eosauropterygia) from a restricted carbonate ramp in the Western Carpathia

A Middle Triassic pachypleurosaur (Diapsida: Eosauropterygia) from a restricted carbonate ramp in the Western Carpathia

An eosauropterygian skeleton found in the Middle Triassic (upper Anisian) Gutenstein Formation of the Fatric Unit (Demänovská dolina Valley, Low Tatra Mountains, Slovakia) represents the earliest known occurrence of marine tetrapods in the Western Carpathians. The specimen represents a partly articulated portion of the postcranial skeleton (nine dorsal vertebrae, coracoid, ribs, gastral ribs, pelvic girdle, femur and one zeugopodial element). It is assigned to the Pachypleurosauria, more pr... Read more

ANDREJ ČERŇANSKÝ, NICOLE KLEIN, JÁN SOTÁK, MÁRIO OLŠAVSKÝ, JURAJ ŠURKA, and PAVEL HERICH

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Revealing the skeleton of polar dinosaur using synchrotron computed tomography

Revealing the skeleton of polar dinosaur using synchrotron computed tomography

Leaellynasaura amicagraphica was a small, bipedal, herbivorous dinosaur from the Early Cretaceous (~106 million years ago) of Australia within the Antarctic Circle of that time.

Synchrotron scans, and the resulting 3D reconstruction of the skull and post-cranial skeleton, provide a unique view of the morphology of Leaellynasaura, and allows this material to be 3D printed for display.

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1University College London, UK; Monash University, Melbourne, Australia; Museum Victoria, Melbourne, Australia

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MIA-Clustering: a novel method for segmentation of paleontological material

MIA-Clustering: a novel method for segmentation of paleontological material

Paleontological research increasingly uses high-resolution micro-computed tomography (μCT) to study the inner architecture of modern and fossil bone material to answer important questions regarding vertebrate evolution. This non-destructive method allows for the measurement of otherwise inaccessible morphology. Digital measurement is predicated on the accurate segmentation of modern or fossilized bone from other structures imaged in μCT scans, as errors in segmentation can result in inaccur... Read more

Christopher J. Dunmore​, Gert Wollny, Matthew M. Skinner

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